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SNP array

Engineering Plans

Learn more

Learn more

Specifications & applications

Medium throughput SNP array device, where 48 samples (1 sample/genechip) can be processed simultaneously per run.
Affymetrix GeneChip 3000
Medium throughput SNP array device, where 4 beadchips can be scanned/loaded simultaneously. The amount of samples that can be loaded is dependent on the assay/beadchip.
Illumina iScan

Image by Lukas Tennie
Specifications
Image by Mezidi Zineb

Sample types

DNA from various tissues > DNA

Microtube* or 96 well plate

See test details/specifications

Room temperature

RNA from various tissues > RNA

Microtube* or 96 well plate

See test details/specifications

Ice (max. 20 min) or dry ice

Extra requirements

Sample types

Deliverables

Below, you can find the type of data files that can be retrieved for this test.

If you require more information or need a more custom output, please consult our Bioinformatics page.

Affy raw data - CEL file

Normalized intensities from the DAT file as generated by the Affymetrix GeneChip

RUO (on request)
Affy raw data - DAT file

The exported intensity data generated by the Affymetrix GeneChip

RUO (on request)
iScan genotype calls - gtc file

The converted intensity data files (.idat) to actual genotypes (based on the .dmap file)

Diagnostic / RUO
iScan raw data - idat file

The exported intensity data generated by the iScan

Diagnostic / RUO
Run folder

The complete run folder can be transferred if it concerns a run reservation (private run)

RUO (on request)
Cardboard Box
Deliverables
Euro Bill

Costs

Below, you can find indicative prices (excl. VAT) for all potential options you'd require to accomplish your project. If you are interested, please contact us to receive a tailored quotation.

Costs

Documents & certificates

Under validation
Under validation
Books
Documents
Plan Experiment

Plan experiment

Related tests

Related tests
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BRIGHTcore / T +32 (0)2 477 64 79 / F +32 (0)2 477 68 59

Photography / See our Colofon

Content & illustrations / Ben Caljon

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